Simultaneously displays structure, sequence and alignment. Software programs for the analysis, rebuilding and visualization of three-dimensional nucleic acid structuresīiomolecular dynamics simulations of proteins, DNA, ligands.Īutomated docking tools designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure.
Molecular Graphics Visualization Software Software Pentagonal Bipyramid vs.The list below includes free software for 3D molecular visualization.Īlso see: 2D Chemical Drawing Software.The Fascination of Crystals and Symmetry.Search for: Follow me on Twitter My Tweets Links High-Resolution Space Group Diagrams and Tables.Smart Mineralogist (Details on the composition, physical, optical, crystallograpic and classification data on 5,000+ minerals).(Itegrated database of Raman spectra, X-ray diffraction and chemistry data for minerals).AMCSD (American Mineralogist Crystal Structure Database).3dt (Java) – for the visulaization of 3D tilings of nets – Freeware.Systre (Java) – analyses nets and creates high-symmetry embeddings – Freeware.ToposPro (Win) – Registratration required, Subset of topological collections are freely available.Programs for the analysis and visualization of nets: Quiztallography (smart phone quizz app for Android and Windows Phone).32 interactive 3D PDFs for the 32 crystal classes, free to download (display only).WinXMorph TM (Win) – Freeware, Donation welcome.KrystalShaper (Win) – Commercial, 50 $, now Freeware.JCrystal (Java) – Commercial, 50 $, now Freeware.Programs that are able to create/display form data of outer shapes of crystals: Diamond 4 (Win) – Commercial, 299 € (Personal perpetual license).CrystalMaker® X (Mac, Win) – Commercial, 499 $ (Educational).ChemCraft (Win, Linux) – Commercial, 8-year subscription 160 $.The crystal creator costs 9.99 €/month for academics Linux, Mac) – Some elements are free, others are available on a monthly/yearly subscription basis. Mercury / CSD (Win, Linux, Mac) – Freeware.(under construction) Visualization/Editing of Crystal Structures
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